# Database: Transmembrane Barrel Secondary Structure DB # Date of preparation: Jan.3, 2007 # Total number of sequences: 34 # Total number of residues: 13608 # Size: 31.911 kB # Version: 1 # This database contains the sequences and transmembrane beta strand assignments for transmembrane barrel proteins of known 3D structure. Candidate membrane proteins were identified from several sources including published lists [1], manual analysis of the PDB [2], and screening of the PDB with TMB-HUNT [3]. Transmembrane beta strands were manually annotated by members of Dr. David Wishart's lab using secondary structures identified by DSSP [4] and VADAR [5] as well as descriptions contained in the original literature. # Database Example Format File: # #>Sequence name to 25 characters; SwissProt ID; PDB ID # MEILPQCDFKLGGAPRALDNQAGTRKEALKHLIAVNMAQPGDSGG # -------EEEEEEEEEEEEE-------EEEEEEEEEEEEE----- # ANGLKCNMCSVLRIAGSSTHQNELANGAILVTQNGCLDIPANNAL # -----EEEEEEEEEEEE--------EEEEEEEEEEE-----EEEE # INASSTGLK # EEEEE---- # Reference: # 1. Bagos PG, Liakopoulos TD, Hamodrakas SJ. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinformatics. 2005 Jan 12;6:7. # 2. Berman H, Henrick K, Nakamura H, Markley JL. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res. 2007 Jan;35(Database issue):D301-3. # 3. Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 1983 Dec;22(12):2577-637. # 4. Garrow AG, Agnew A, Westhead DR. TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W188-92. # 5. Willard L, Ranjan A, Zhang H, Monzavi H, Boyko RF, Sykes BD, Wishart DS. VADAR: a web server for quantitative evaluation of protein structure quality. Nucleic Acids Res. 2003 Jul 1;31(13):3316-9. >FERRIC HYDROXAMATE UPTAKE RECEPTOR; SWP:P06971; PDB:1QFGA ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEA --------------------------------------------------- LSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAV --------------------------------------------------- IDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTD ---------------------------------------EEEEEEEEEEE- SLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWR -EEEEEEEEEEE-----EEEEEEEEEEEEEEE----EEEEEEEEEEEEEEE PDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNN ---EEEEEEEEEEEEEEEE-------------------------------E TYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANA EEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEE------- YSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLL --------------EEEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEE TGVDFMRMRNDINAWFGYDDSVPLLNLYNPSSHHHHHHGSSVNTDFDFNAK EEEEEEEEEEEEEEEEEE--------------------------------- DPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAG ---EEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEE---- TTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSK EEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEE------------EEE GKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRAR EEEEEEEEEEE----EEEEEEEEEEEEEEEEEEE------EEEEEEEEEEE GVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWAD EEEEEEEEE----EEEEEEEEEEEEEEEE-------------EEEEEEEEE YTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVG EEE-------EEEEEEEEEE--------------EEEEEEEEEEEE----- MAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF ---EEEEEEEE-----------------------EEEEEEEEEE >VITAMIN B12 RECEPTOR; SWP:P06129; PDB:1NQEA DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQ --------------------------------------------------- NGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRV --------------------------------------------------- EYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQ -----------------------------EEEEEEEEEE--EEEEEEEEEE QLGDKTRVTLLGDYAHTHGGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRT E----EEEEEEEEEEEEE--EEEEEEEEEEEEE---EEEEEEEEEEEEEEE NDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYATLDEMKQYTVQW E-EEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEE-EEEEEEEEEEEE ANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDF EEEEE----EEEEEEEEEEEEEE----------EEEEEEEEEEEEEEE--E TFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLY EEEEEEEEEEEE---EEEEEEEEEEEEEE--EEEEEEEEEEEEE------- GFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKY ---------EEEEEEEEEEEEEE---EEEEEEEEEEEEE-EEEEE----EE YNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNAITDTPLLRRAKQQVK EEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEE----------EEEEE YQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPV EEEEEE---EEEEEEEEEE--------------------EEEEEEEEEE-- TSHLTVRGKIANLFDKDYETVYGYQTAGREYTLSGSYTF --EEEEEEEEE-----------------EEEEEEEEEEE >OMPK36; SWP:Q48473; PDB:1OSMA AEIYNKDGNKLDLYGKIDGLHYFSDDKDVDGDQTYMRLGVKGETQINDQLT --------EEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEE---EEE GYGQWEYNVQANNTESSSDQAWTRLAFAGLKFGDAGSFDYGRNYGVVYDVT EEEEEEEEEEE--------EEEEEEEEEEEE-----EEEEEEEEE------ SWTDVLPEFGGDTYGSDNFLQSRANGVATYRNSDFFGLVDGLNFALQYQGK ---------------------EEEEEEEEEEE---------EEEEEEEE-- NGSVSGEGATNNGRGALKQNGDGFGTSVTYDIFDGISAGFAYANSKRTDDQ ----------------------EEEEEEEEEEE--EEEEEEEEEEEE---- NQLLLGEGDHAETYTGGLKYDANNIYLATQYTQTYNATRAGSLGFANKAQN ---------EEEEEEEEEEEEE--EEEEEEEEEEE-----------EEEEE FEVAAQYQFDFGLRPSVAYLQSKGKDLNGYGDQDILKYVDVGATYYFNKNM EEEEEEEE----EEEEEEEEEEEEE------EEEEEEEEEEEEEEE---EE STYVDYKINLLDDNSFTRSAGISTDDVVALGLVYQF EEEEEEEEEE--------------EEEEEEEEEEE- >MATRIX PORIN OUTER MEMBRANE PROTEIN F; SWP:P02931; PDB:1BT9A AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQI --------EEEEEEEEEEEEEEE----------------EEEEEEEEEEEE NSDLTGYGQWEYNFQGNNSEGAAAQTGNKTRLAFAGLKYADVGSFDYGRNY E--EEEEEEEEEEEEEE----------EEEEEEEEEEEE---EEEEEEEEE GVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNF E---------------------------EEEEEEEEEEEE--------EEE AVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQP EEEEE--------------EEEEEEEEE---EEEEEEEEEEEE-------- LGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQ ----EEEEEEEEEEEEE---EEEEEEEEEEE-----------------EEE DVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKN EEEEEEEEE----EEEEEEEEEEEEE------EEEEEEEEEEEEEEE---E MSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF EEEEEEEEEEE-------------EEEEEEEEE- >PHOSPHOPORIN; SWP:P02932; PDB:1PHO_ AEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFGFKGETQINDQLT --------EEEEEEEEEEEEEEEEE---------EEEEEEEEEEE----EE GYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVE EEEEEEEEEEE--------EEEEEEEEEEEEEE---EEEEEEEEE------ AWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQG ----------------------EEEEEEEEEEEE--------EEEEEEEEE KNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTG EE-----------EEEEEEEEEE--EEEEEEEEEEEEEE------------ KRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF EEEEEEEEEEEEEE--EEEEEEEEEEE-----------EEEEEEEEEEEE- DFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKIN ---EEEEEEEEEEEEE--------EEEEEEEEEEEEE---EEEEEEEEEEE QLDSDNKLNINNDDIVAVGMTYQF E-----------EEEEEEEEEEE- >PORIN; SWP:P39767; PDB:1BH3_ MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKL -EEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEE---EEEEEEE RMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGY EEEEE-----------EEEEEEEE--EEEEEE------------------- EASSFGDAQSSFFKYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQ ---------------------------EEEEEEEEE---EEEEEEEEE--- TVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFND --------EEEEEEEEEE--EEEEEEEEEE-------EEEEEEEEEEE--- AGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGI EEEEEEEEEEE------EEEEEEEEE----EEEEEEEEEEEE--EEEEEEE GADYQFAEGVKVSGSVQSGFANETVADVGVRFDF EEEEE----EEEEEEEEEE---EEEEEEEEEEEE >OUTER MEMBRANE PROTEIN TOLC; SWP:P02930; PDB:1EK9A ENLQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSN --------------------------------------EEEEEEEEEEEEE GYRDANGINSNATSASLQLTQSIFDSKWRALTLQEKAAGIQDVTYQTDQQT E------EEEEEEEEEEEEEEEEE--------------------------- LILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQ --------------------------------------------------- NARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKP --------------------------------------------------- QPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGIS ---------------------------------------EEEEEEEEEEEE DTSYSGSKTRGAAGTQYDDSNGQNKVGLSFSLPIYQGGVNSQVKQAQYNFV E---------------------EEEEEEEEEE------------------- GASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAEAGY --------------------------------------------------- SVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLL --------------------------------------------------- ALNNALSKPVSTNPE --------------- >OUTER MEMBRANE PROTEIN G; SWP:NA; PDB:2F1CX NDWHFNIGAMYEIENVGLAEPSVYFNAANGPWRIALAYYQEGPVDYSKRGT -EEEEEEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEE-----EE WFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIA EEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEE-----EEEEEEEEEEE PDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVA EEEEEE---EEEEE-EEEEEEEE---------EEEEEEEEEEEEE---EEE LRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRW EEEEEEEEEEEE--------EEEEEEEEEEEEEE---EEEEEEEEEEEEEE SNDFNRVGLFYGYDFQNGLSVSLEYAFEWQDDKFHYAGVGVNYSFHHH ---EEEEEEEEEEE----EEEEEEEEEEE---EEEEEEEEEEEEEEE- >OUTER MEMBRANE PROTEIN A; SWP:P0A910; PDB:2GE4A MAPKDNTWYTGAKLGFSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVG ------EEEEEEEEEEE---------------EEEEEEEEEEEEE---EEE FEMGYDFLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMV EEEEE------------------EEEEEEEEEEEE----EEEEEEEEEEEE FRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQFTNNIGDAHT EEEE---------------EEEEEEEEEE----EEEEEEEEE--------- IGTRPDNGMLSLGVSYRFGQGEAA --------EEEEEEEEEE------ >FERRICHROME-IRON RECEPTOR; SWP:NA; PDB:2GRXA TITVTAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEM --------------------------------------------------- ALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGL --------------------------------------------------- KLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEP --------------------------------------------------E LKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQ EEEEEEEEEE--EEEEEEEEEEE-----EEEEEEEEEEEEEEE----EEEE RYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRL EEEEEEEEEEE---EEEEEEEEEEEEEEEE--------------------- PTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVY ----------EEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEE GYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSK EEEE---------------------EEEEEEEEEEEEEEEEEEEEEEEEEE FATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLTDFDFNAKDPANS EE---EEEEEEEEEEEEEEEEEEEEEEEE-----EEE------------EE GPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKR EEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEE----EEEEE DDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYE EEEEEEEEEEEEEE-----EEEEEEEEEEE----------EEEEEEEEEEE VGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIE EEEEEE---EEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEE AKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFD EEEE---EEEEEEEEEEEEEEEEE-------------EEEEEEEEEEEE-- GPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSN -----EEEEEEEEEEE-------------EEEEEEEEEEEE--------EE VALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF EEEEEE----------------------EEEEEEEEEE- >VITAMIN B12 TRANSPORTER BTUB; SWP:NA; PDB:2GUFA QDTSPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPG --------------------------------------------------- VDITQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVE --------------------------------------------------- YIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQ ----------------------------EEEEEEEEE---EEEEEEEEEEE LGDKTRVTLLGDYAHTHDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTN ----EEEEEEEEEEEE---EEEEEEEEEEEEE---EEEEEEEEEEEEEEEE YDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATL --EEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEE----------EEE DEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIY EEEEEEEEEEEEEEE----EEEEEEEEEEEEEE--------EEEEEEEEEE LTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTS EEEEEE---EEEEEEEEEEEEE---EEEEEEEEEEEE----EEEEEEEEEE YKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDL EEE----------------EEEEEEEEEEEEEE---EEEEEEEEEEEEE-E IDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNAITDTP EEEE----EEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEE---EE LLRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVS EE--EEEEEEEEEEEE---EEEEEEEEEE--------------------EE LWDLAVAYPVTSHLTVRGKIANLFDKDYAGREYTLSGSYTF EEEEEEEEE---EEEEEEEEE---------EEEEEEEEEEE >PORIN; SWP:P39767; PDB:1H6S1 EISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKL -EEEEEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEE---EEEEEEE RMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGY EEEEE-----------EEEEEEEE--EEEEE-------------------- EASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQ --------------------------EEEEEEEEEEE--EEEEEEEEE--- TVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFND ---------EEEEEEEEE---EEEEEEEEE--------EEEEEEEEEE--- AGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGI EEEEEEEEEEE------EEEEEEEEEE---EEEEEEEEEEEE----EEEEE GADYQFAEGVKVSGSVQSGFANETVADVGVRFDF EEEEE----EEEEEEEEEE----EEEEEEEEEE- >PORIN P; SWP:NA; PDB:2O4VA GTVTTDGADIVIKTKGGLEVATTDKEFSFKLGGRLQADYGRFDGYYTNNGN -------EEEEEEE--EEEEEE---EEEEEEEEEEEEEEEEE--------E TADAAYFRRAYLEFGGTAYRDWKYQINYDLSRNVGNDSAGYFDEASVTYTG EEEEEEEEEEEEEEEEEE--EEEEEEEEE-----------EEEEEEEEE-- FNPVNLKFGRFYTDFGLEKATSSKWVTALERNLTYDIADWVNDNVGTGIQA ---EEEEEEEEEEE-------------------------------EEEEEE SSVVGGMAFLSGSVFSENNNDTDGDSVKRYNLRGVFAPLHEPGNVVHLGLQ EEEE--EEEEEEEEEEEEEE----EEEEEEEEEEEEE------EEEEEEEE YAYRDLEDSAVDTRIRPRMGMRGVSTNGGNDAGSNGNRGLFGGSSAVEGLW EEEEEE--------------------------------------------E KDDSVWGLEGAWALGAFSAQAEYLRRTVKAERDREDLKASGYYAQLAYTLT EEEEEEEEEEEEEE--EEEEEEEEEEEEEEE---EEEEEEEEEEEEEEE-- GEPRLYKLDGAKFDTIKPENKEIGAWELFYRYDSIKVEDDNIVVDSATREV ------------------------EEEEEEEEEEEEEEE------------ GDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKISNANGDDSGDGLVMRLQ -EEEEEEEEEEEEEE---EEEEEEEEEEEEEE--------EEEEEEEEEEE YVF EEE >OUTER MEMBRANE PROTEIN TOLC; SWP:P02930; PDB:1TQQA ENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYS ---------------------------------------EEEEEEEEEEEE NGYRDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQ EE------EEEEEEEEEEEEEEEEE-------------------------- QTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITD --------------------------------------------------- VQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTD --------------------------------------------------- KPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTG -----------------------------------------EEEEEEEEEE ISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQ EEE-EEE--------------EEEEEEEEEEEEEE---------------- YNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDA --------------------------------------------------- MEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLN --------------------------------------------------- EQDLLALNNALSKPVSTNPE -------------------- >MALTOPORIN; SWP:P02943; PDB:1AF6A VDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGNECETYAELKLGQEVW -EEEEEEEEEEEEE------------------------EEEEEEEEEE--- KEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLPGSTIWA ----EEEEEEEEEEEEE----------EEEEEEEEEEE--------EEEEE GKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSS EEEE------------------EEEEEEEEE---EEEEEEEEEEEEEEE-- SFASNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRL ----------EEEEEEEEEEEEEEEEE----EEEEEEEEEEEEE------- VDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFD ------EEEEEEEEEEEEE--EEEEEEEEEEE------------------- NEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINWDNDNGTKWW -----------EEEEEEEEEEEEEE--EEEEEEEEEEEEEEE----EEEEE TVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSI EEEEEEEEE----EEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEE---- WSRPAIRVFATYAKWDEKWGYDYTGNADNNANFGKAVPADFNGGSFGRGDS -EEEEEEEEEEEEEEE---------------------------------EE DEWTFGAQMEIWW EEEEEEEEEEEEE >ADHESIN; SWP:NA; PDB:2GR8A SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDN ------------------------EEEEEEEEEE---EEEEEEEEEEEE-- GKVIIRLSGTTNSQGKTGVAAGVGYQW -EEEEEEEEEEE----EEEEEEEEEE- >IRON(III) DICITRATE TRANSPORT PROTEIN FECA; SWP:NA; PDB:1KMOA ALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVS --------------------------------------------------- APENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLA --------------------------------------------------- PVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQL -----------------------------------------EEEEEEEEEE SPTSSQNNPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLM E------EEEEEEEEEEEEE----EEEEEEEEEEE-------EEEEEEEEE LKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQSTRPYDRFWG EEEEEE---EEEEEEEEEEEEEEEEE--------------------EEEEE RRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRG EEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEE IEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYD EEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEEEEE---------EEEE RDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSY EEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEE---EEEEEEE NAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKART EEEEEEEEEEEE---EEEEEEEEEEEEEE----------------EEEEEE WELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQA EEEEEEEE--EEEEEEEEEEEEEE--------------EEEEEEEEEEEEE RYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVD EEE----------EEEEEEEEEEEEEEE--------------EEEEEEEEE YKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDF EE---EEEEEEEEEEEEEE----------------EEEEEEEEEEEEEEEE GPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF ------EEEEEEEE------------------------EEEEEEEEEEE >FERRIC ENTEROBACTIN RECEPTOR; SWP:P77093; PDB:1FEPA DDTIVVTAAEQNLQAPGVSTITADEIRKNPVARDVSKIIRTPGVNLTGNST --------------------------------------------------- SGQRGNNRQIDIRGGPENTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWV --------------------------------------------------- PPEIERIEVLRGPAAARYGNGAAGGVVNIITKKGSGEWHGSWDAYFNAPEH ------------------------------------EEEEEEEEEEEEEE- KEEGATKRTNFSLTGPLGDEFSFRLYGNLDKTQADAWDINQGHQSARAGTY --EEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEE--------------- ATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQGNLYAGDTQNTN -------EEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEE-------- SDSYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTRNSRIPE ----------EEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEE-- GLAGQDFVDIDLDDVLHSEVNLPIDFLVNQTLTLGTEWNQQRKDLSSNTQA -----EEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEE------- DRSPYSKAEIFSLFAENNELTDSTIVTPGLRFDHHSIVGNNWSPALNISQG ----EEEEEEEEEEEEEE-----EEEEEEEEEEEEE---EEEEEEEEEEEE LGDDFTLKGIARAYKAPSLYQTNPNYILYSKGQGCYLQGNDDLKAETSINK ----EEEEEEEEEEEE----------------------------EEEEEEE EIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKA EEEEEEE---EEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEE VVEGLEGSLNVPVSETVWTNNITYLKSENKTTGDRLSIIPEYTLNSTLSWQ EEEEEEEEEEE-----EEEEEEEE-EEEEE--------EEEEEEEEEEEE- AREDLSQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLSATWDVT ----EEEEEEEEEEEEE----------------EEEEEEEEEEEEEEEE-- KNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWY -EEEEEEEEE-------------------------------------EEEE SVNTHF EEEEEE >FERRIPYOVERDINE RECEPTOR; SWP:P48632; PDB:1XKHA ATITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNDDFG --------------------------------------------------- LNNIDDVRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSA --------------------------------------------------- GNTLSDAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGA ------------------------------------------EEEEEEE-E GSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFDHYERKTSVYYGILE EE--EEEEEEEEE-------EEEEEEEEEEEEEE----EEEEEEEEEEEEE FDLNPDTLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWS EE--EEEEEEEEEEEEEEEE------------------------------E SWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIGDWPAPDNSA EEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEE---------- KIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWN EEEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEE--- LRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYTARFNVTDDLN --------------------------EEEEEEEEEEE--EEEEEE---EEE LFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFPQ EEEEEEEEEEEEE-----EEEEEEEEEEEEEEEE----EEEEEEEEEE--- DSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEED ---EEE----EEE-EEEEEEEEEEEEEE----EEEEEEEEEEEEE-EEEEE ALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRD -------------EEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEE- DSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQVYNNPRS -----------EEEEEEEEEEEE-----EEEEEEEEEEE------------ RWEKFSQEDYWLVDLARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYG ------E-EEEEEEEEEEE-----EEEEEEEE------------------- DPRNLFSTRWDF ---EEEEEE--- >FE(III)-PYOCHELIN RECEPTOR; SWP:P42512; PDB:1XKWA ESTSATQPPGVTTLGKVPLKPRELPQSASVIDHERLEQQNLFSLDEAMQQA --------------------------------------------------- TGVTVQPFQLLTTAYYVRGFKVDSFELDGVPALLGNTASSPQDMAIYERVE --------------------------------------------------- ILRGSNGLLHGTGNPAATVNLVRKRPQREFAASTTLSAGRWDRYRAEVDVG -------------------------EEEEEEEEEEEEEEE--EEEEEEEEE GPLSASGNVRGRAVAAYEDRDYFYDVADQGTRLLYGVTEFDLSPDTLLTVG EE-----EEEEEEEEEEEEEE-----EEEEEEEEEEEEEEE----EEEEEE AQYQHIDSITNMAGVPMAKDGSNLGLSRDTYLDVDWDRFKWDTYRAFGSLE EEEEEEEEE---------------------------EEEEEEEEEEEEEEE QQLGGGWKGKVSAEYQEADSRLRYAGSFGAIDPQTGDGGQLMGAAYKFKSI EE----EEEEEEEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEE QRSLDANLNGPVRLFGLTHELLGGVTYAQGETRQDTARFLNLPNTPVNVYR EEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEE------EEEEE--- WDPHGVPRPQIGQYTSPGTTTTTQKGLYALGRIKLAEPLTLVVGGRESWWD ------------------EEEEEEEEEEEEEEEEE---EEEEEEEEEEEEE QDTPATRFKPGRQFTPYGGLIWDFARDWSWYVSYAEVYQPPLSPVEGKTYE EEE--------EEEEEEEEEEEEE---EEEEEEEEEEEE----EEEEEEEE TGIKGELADGRLNLSLAAFRIDLENNPQEDPDHPGPPNNPFYISGGKVRSQ EEEEEEE----EEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEE GFELEGTGYLTPYWSLSAGYTYTSTEYLKDSQNDSGTRYSTFTPRHLLRLW EEEEEEE-----EEEEEEEEEEEEEEEEEE--------------EEEEEEE SNYDLPWQDRRWSVGGGLQAQSDYSVDYRGVSMRQGGYALVNMRLGYKIDE EEEEE-----EEEEEEEEEEE---------------EEEEEEEEEEEE--- HWTAAVNVNNLFDRTYYQSLSNPNWNNRYGEPRSFNVSLRGAF EEEEEEEEE-----------------------EEEEEEEEEEE >OUTER MEMBRANE PROTEIN OPRM; SWP:Q51487; PDB:1WP1A CSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQ --------------------------------------------------- LIGVALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGD -----------------------------------EEEEEEEEEEEEE--- LSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSA ------EEEEE-EEEEEEEEEEEE--------------------------- QTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASAL --------------------------------------------------- DLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSGIPANLPQGLGLDQT --------------------------------------------------- LLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANA ------------------------------------------EEEEEEE-- GTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQ EEEE-----------EEEEEEEEEEE------------------------- YEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGV --------------------------------------------------- DNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQQTVT ------------------------------------------------ >MULTIDRUG RESISTANCE PROTEIN; SWP:NA; PDB:1YC9A WPSANWWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGAIRS --------------------------------------------------- FDLGLAASATESKVSERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAV EEEEEEEEEEEEE-------------EEEEEEEEEEEEEEE---------- VAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNK --------------------------------------------------- TVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALV --------------------------------------------------- GQGPDRAASIEEPHITLTSRYVGLLGHRADITAARWRAEAAAQQVGIAQAQ --------------EEE---------------------------------- FYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFTGGRLEGQLTS --EEEEEEEEEEEEEE----------EEEEEEEEEEE-------------- AEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQAL --------------------------------------------------- HIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGG --------------------------------------------------- GFE --- >MALTOPORIN; SWP:P26466; PDB:1MPRA VDFHGYARSGIGWTGSGGEQQCFQATGAQSKYRLGNECETYAELKLGQEVW -EEEEEEEEEEEEE------------------------EEEEEEEEEEEEE KEGDKSFYFDTNVAYSVNQQNDWESTDPAFREANVQGKNLIEWLPGSTIWA EE--EEEEEEEEEEEEE----------EEEEEEEEEEE--------EEEEE GKRFYQRHDVHMIDFYYWDISGPGAGIENIDLGFGKLSLAATRSTEAGGSY EEEE------------------EEEEEEEE----EEEEEEEEEEEEEEEEE TFSSQNIYDEVKDTANDVFDVRLAGLQTNPDGVLELGVDYGRANTTDGYKL E------EEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEE------- ADGASKDGWMFTAEHTQSMLKGYNKFVVQYATDAMTTQGKGQARGSDGSSS ------EEEEEEEEEEEE---EEEEEEEEEEE----------------EEE FTEKINYANKVINNNGNMWRILDHGAISLGDKWDLMYVGMYQNIDWDNNLG EE--EEEEEEEE---EEEEEEEEEEEEEE--EEEEEEEEEEEEEEE---EE TEWWTVGVRPMYKWTPIMSTLLEVGYDNVKSQQTGDRNNQYKITLAQQWQA EEEEEEEEEEEEE----EEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEE GDSIWSRPAIRIFATYAKWDEKWGYIKDGDNISRYAAATNSGISTNSRGDS -------EEEEEEEEEEEEEE----------------------------EE DEWTFGAQMEIWW EEEEEEEEEEEEE >LONG-CHAIN FATTY ACID TRANSPORT PROTEIN; SWP:P10384; PDB:1T16A AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVY ------------------------------------------EEEEEEEEE IDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNY EEEEEEEE---------------EEEEEEEEEEEE----EEEEEEEEEEEE GLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARA EEEEEE----------EEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEE KIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQ EEEEEE-----------------------------------EEEEEEEEEE WGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIP EEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEEE-------------E TATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKA EE---EEEEEEEEEEE--EEEEEEEEE----EEEEEEEEEE-----EEEEE TSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNR E------EEEEEE---EEEEEEEEEEEE---EEEEEEEEEEE--------- SISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEG --------EEEEEEEEEEE---EEEEEEEEEEEEEEEEEEE----EEEEEE KAWLFGTNFNYAFHHHHHH EEEEEEEEEEEEE------ >SUCROSE-SPECIFIC PORIN; SWP:P22340; PDB:1A0SP SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEM -EEEEEEEEEEEEEEE-----------------------------EEEEEE NLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPT EEEEEEE----EEEEEEEEEEEEE------------EEEEEEEEEEE---- FAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRS ------EEEEEEEEEE------------------EEEEEEEEEEE---EEE NFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDS EEEEEEEEE-------EEEEEEEEEEEEEE--EEEEEEEEEE--------- NGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIG ----------EEEEEEEEEEEE--------EEEEEEEEEEE---------- SDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWAT --------EEEEEEEEEEEE----EEEEEEEEEEEEEE------EEEEEEE FNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFK EEEEEEEE----EEEEEEEEEEEEEEE---------EEEEEEEEEEEEEEE VGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQ ----------EEEEEEEEEEEEE--------------------EEEEEEEE METWF EEEEE >OUTER MEMBRANE PORIN PROTEIN 32; SWP:P24305; PDB:1E54A SSVTLFGIVDTNVAYVNKDAAGDSRYGLGTSGASTSRLGLRGTEDLGGGLK -EEEEEEEEEEEEEEEE-----EEEEEEEE----EEEEEEEEEE-----EE AGFWLEGEIFGDDGNASGFNFKRRSTVSLSGNFGEVRLGRDLVPTSQKLTS EEEEEEEEEE------------EEEEEEEEE--EEEEE------------- YDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNAGFGY ---------------------------------EEEEEE-----EEEEEEE AFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDE EE-------------EEEEEEEEEE---EEEEEEEEEEEEE---EEEEEEE ITLGASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVK EEEEEEEE---EEEEEEEEEEEEEE----EEEEEEEEEEEEEE----EEEE LQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQA EEEEEEEE----EEEEEEEEEEEEE---EEEEEEEEEEEEEE----EEEEE KGVYAGGVQAGESQTGVQVGIRHAF -----------EEEEEEEEEEEEEE >NIDOGEN-1; SWP:P10493; PDB:1GL4A TCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVK -----------------------------------------EEEEEEEEEE GRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPI EEEEE-----EEEEEEEEEEEEEE----EEEEEEE---------------- GGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGID --------EEEE------------EEEEEEEEEE-----EEEEEEEEE--- EHGHLTISTELEGRVPQIPYGASVHIEPYTELYHYSSSVITSSSTREYTVM ---EEEEEEEEEEEEE-----EEEEE-EEEEEEEE---EEEEEEEEEEEEE EPDQDGAAPSHTHIYQWRQTITFQECAHDDARPALPSTQQLSVDSVFVLYN EE-------EEEEEEEEEEEEEE-------------EEEEEEEEEEEEEEE KEERILRYALSNSIGPVR ----EEEEEEEEEEE--- >NALP; SWP:NA; PDB:1UYNX AATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGG ---------------------------------EEEEEEEEEEEEEEE--- VEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTWSENSANAKTDSISLFA EEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEE--EEEEEEEEEEEE GIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGG EEEEEE---EEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEE VNVPTGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKL EEE---EEEEEEEEEEEEEEE--EEEE----------EEEEEEEEEEEEEE SQPLSDKAVLFATAGVERDLNGRDYTVTGPHTRLVAGLGADVEFGNGWNGL EEE----EEEEEEEEEEEE------------EEEEEEEEEEEEEE--EEEE ARYSYAGSKQYGNHSGRVGVGYRF EEEEEEEE--EEEEEEEEEEEEE- >PORIN; SWP:P31243; PDB:2POR_ EVKLSGDARMGVMYNGDDWNFSSRSRVLFTMSGTTDSGLEFGASFKAHESV -EEEEEEEEEEEEE---EEEEEEEEEEEEEEEEE----EEEEEEEE----- GAETGEDGTVFLSGAFGKIEMGDALGASEALFGDLYEVGYTDLDDRGGNDI --------EEEEEE--EEEEEEE---------------------------- PYLTGDERLTAEDNPVLLYTYSAGAFSVAASMSDGKVGETSEDDAQEMAVA ---------------EEEEEEEE--EEEEEEEE------------EEEEEE AAYTFGNYTVGLGYEKIDSPDTALMADMEQLELAAIAKFGATNVKAYYADG EEEEE--EEEEEEEEEEE---------EEEEEEEEEEEE--EEEEEEEEEE ELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQVLDID EE-------------------EEEEEEEEEEEEEEE--EEEEEEEEEEEE- TIDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFKF --EEEEEEEEEEEEEEE--EEEEEEEEEE-------EEEEEEEEEE >PROTEASE VII; SWP:P09169; PDB:1I78A STETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVSQLDWKFNNAAI ---------EEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEE-EEE IKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDEARHP EEEEEEE-----EEEEEEEEEE---EEEEEEEEE-----------EEEEEE DTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSE EEEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEE--EEEE--- EGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWV ---------------EEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEE ESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR EEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEEE VTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF EEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEEEEE- >ALPHA-HEMOLYSIN; SWP:P09616; PDB:7AHLA ADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKK --------------------------------------------------- LLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYY --------------------------------------------------- PRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDF ------EEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEE-- KTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSM --------------------------------------------------- KAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDD --------------------------------------------------- YQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN -------------------------------------- >NUCLEOSIDE-SPECIFIC CHANNEL-FORMING PROTEIN TSX; SWP:P22786; PDB:1TLWA LSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVP ---EEEEEEEEEEEE-------EEEEEEEEEEEEEE--EEEEEEEEEEE-- LFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMG EEEEEEEEEE-------------EEEEEEEEEEEEEE------EEEEEEEE LGTDIDTGLPMSLSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLW EEEEEE----EEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEE-- GGQLSYIGFTNFDWGSDLGDDSGNAINGIKTRTNNSIASSHILALNYDHWH -EEEEEEEEEEEEE--------------------EEEEEEEEEEEE--EEE YSVVARYWHDGGQWNDDAELNFGNGNFNVRSTGWGGYLVVGYNFHHH EEEEEEEEE------------------------EEEEEEEEEEE--- >OUTER MEMBRANE PHOSPHOLIPASE A; SWP:P00631; PDB:1FW2A AVRGSIIANMLQEHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENAR -------------------EEEE-EEEEEEEEEE----------------- KDEVKFQLSLAFPLWRGILGPNSVLGASYTQKSWWQLSNSEESSPFRETNY EEEEEEEEEEEEEEE------EEEEEEEEEEEEEE---------EEEEEEE EPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRSWNRLYTRLMAE EEEEEEEEEEEEEE--EEEEEEEEEEEEEEE--------EEEEEEEEEEEE NGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNW E--EEEEEEEEEEE---------------EEEEEEEEE--EEEEEEEEEE- NTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLND -----EEEEEEEE-----EEEEEEEEE-----------EEEEEEEEEEEE- LF -- >OUTER MEMBRANE PROTEIN; SWP:NA; PDB:1K24A QTANEFTVHTDLSSISSTRAFLKEKHKAAKHIGVRADIPFDANQGIRLEAG ---EEEEEEEEEEEEEE-------EEEEEEEEEEEEEEE---EEEEEEEEE FGRSKKNIINLETDENKLGKTKNVKLPTGVPENRIDLYTGYTYTQTLSDSL EEEEE--------------------------EEEEEEEEEEEEEEEEE--E NFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQLGNGWYINP EEEEEEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEE----EEEEE WSEVKFDLNSRYKLNTGVTNLKKDINQKTNGWGFGLGANIGKKLGESASIE EEEEEEEEEEEEEE----------EEEE--EEEEEEEEEEEEEE---EEEE AGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF EEEEEEEEEE---------------------EEEEEEEEEEEEEE